A Multiview Semantic Vegetation Index for Robust Estimation of Urban Vegetation Cover

Urban vegetation growth is vital for developing sustainable and liveable cities in the contemporary era since it directly helps people’s health and well-being. Estimating vegetation cover and biomass is commonly done by calculating various vegetation indices for automated urban vegetation management and monitoring. However, most of these indices fail to capture robust estimation of vegetation cover due to their inherent focus on colour attributes with limited viewpoint and ignore seasonal changes. To solve this limitation, this article proposed a novel vegetation index called the Multiview Semantic Vegetation Index (MSVI), which is robust to color, viewpoint, and seasonal variations. Moreover, it can be applied directly to RGB images. This Multiview Semantic Vegetation Index (MSVI) is based on deep semantic segmentation and multiview field coverage and can be integrated into any vegetation management platform. This index has been tested on Google Street View (GSV) imagery of Wyndham City Council, Melbourne, Australia. The experiments and training achieved an overall pixel accuracy of 89.4% and 92.4% for FCN and U-Net, respectively. Thus, the MSVI can be a helpful instrument for analysing urban forestry and vegetation biomass since it provides an accurate and reliable objective method for assessing the plant cover at street level

A deep semantic vegetation health monitoring platform for citizen science imaging data

Automated monitoring of vegetation health in a landscape is often attributed to calculating values of various vegetation indexes over a period of time. However, such approaches suffer from an inaccurate estimation of vegetational change due to the over-reliance of index values on vegetation’s colour attributes and the availability of multi-spectral bands. One common observation is the sensitivity of colour attributes to seasonal variations and imaging devices, thus leading to false and inaccurate change detection and monitoring. In addition, these are very strong assumptions in a citizen science project. In this article, we build upon our previous work on developing a Semantic Vegetation Index (SVI) and expand it to introduce a semantic vegetation health monitoring platform to monitor vegetation health in a large landscape. However, unlike our previous work, we use RGB images of the Australian landscape for a quarterly series of images over six years (2015–2020). This Semantic Vegetation Index (SVI) is based on deep semantic segmentation to integrate it with a citizen science project (Fluker Post) for automated environmental monitoring. It has collected thousands of vegetation images shared by various visitors from around 168 different points located in Australian regions over six years. This paper first uses a deep learning-based semantic segmentation model to classify vegetation in repeated photographs. A semantic vegetation index is then calculated and plotted in a time series to reflect seasonal variations and environmental impacts. The results show variational trends of vegetation cover for each year, and the semantic segmentation model performed well in calculating vegetation cover based on semantic pixels (overall accuracy = 97.7%). This work has solved a number of problems related to changes in viewpoint, scale, zoom, and seasonal changes in order to normalise RGB image data collected from different image devices

Health Assessment of Eucalyptus Trees Using Siamese Network from Google Street and Ground Truth Images

Urban greenery is an essential characteristic of the urban ecosystem, which offers various advantages, such as improved air quality, human health facilities, storm-water run-off control, carbon reduction, and an increase in property values. Therefore, identification and continuous monitoring of the vegetation (trees) is of vital importance for our urban lifestyle. This paper proposes a deep learning-based network, Siamese convolutional neural network (SCNN), combined with a modified brute-force-based line-of-bearing (LOB) algorithm that evaluates the health of Eucalyptus trees as healthy or unhealthy and identifies their geolocation in real time from Google Street View (GSV) and ground truth images. Our dataset represents Eucalyptus trees’ various details from multiple viewpoints, scales and different shapes to texture. The experiments were carried out in the Wyndham city council area in the state of Victoria, Australia. Our approach obtained an average accuracy of 93.2% in identifying healthy and unhealthy trees after training on around 4500 images and testing on 500 images. This study helps in identifying the Eucalyptus tree with health issues or dead trees in an automated way that can facilitate urban green management and assist the local council to make decisions about plantation and improvements in looking after trees. Overall, this study shows that even in a complex background, most healthy and unhealthy Eucalyptus trees can be detected by our deep learning algorithm in real time

Schizophrenia risk conferred by rare protein-truncating variants is conserved across diverse human populations

Schizophrenia (SCZ) is a chronic mental illness and among the most debilitating conditions encountered in medical practice. A recent landmark SCZ study of the protein-coding regions of the genome identified a causal role for ten genes and a concentration of rare variant signals in evolutionarily constrained genes(1). This recent study-and most other large-scale human genetics studies-was mainly composed of individuals of European (EUR) ancestry, and the generalizability of the findings in non-EUR populations remains unclear. To address this gap, we designed a custom sequencing panel of 161 genes selected based on the current knowledge of SCZ genetics and sequenced a new cohort of 11,580 SCZ cases and 10,555 controls of diverse ancestries. Replicating earlier work, we found that cases carried a significantly higher burden of rare protein-truncating variants (PTVs) among evolutionarily constrained genes (odds ratio = 1.48; P = 5.4 x 10(-6)). In meta-analyses with existing datasets totaling up to 35,828 cases and 107,877 controls, this excess burden was largely consistent across five ancestral populations. Two genes (SRRM2 and AKAP11) were newly implicated as SCZ risk genes, and one gene (PCLO) was identified as shared by individuals with SCZ and those with autism. Overall, our results lend robust support to the rare allelic spectrum of the genetic architecture of SCZ being conserved across diverse human populations.Peer reviewe

Cohort profile: the ESC EURObservational Research Programme Non-ST-segment elevation myocardial infraction (NSTEMI) Registry

Aims The European Society of Cardiology (ESC) EURObservational Research Programme (EORP) Non-ST-segment elevation myocardial infarction (NSTEMI) Registry aims to identify international patterns in NSTEMI management in clinical practice and outcomes against the 2015 ESC Guidelines for the management of acute coronary syndromes in patients presenting without ST-segment-elevation. Methods and results Consecutively hospitalised adult NSTEMI patients (n = 3620) were enrolled between 11 March 2019 and 6 March 2021, and individual patient data prospectively collected at 287 centres in 59 participating countries during a two-week enrolment period per centre. The registry collected data relating to baseline characteristics, major outcomes (inhospital death, acute heart failure, cardiogenic shock, bleeding, stroke/transient ischaemic attack, and 30-day mortality) and guideline-recommended NSTEMI care interventions: electrocardiogram pre- or in-hospital, prehospitalization receipt of aspirin, echocardiography, coronary angiography, referral to cardiac rehabilitation, smoking cessation advice, dietary advice, and prescription on discharge of aspirin, P2Y12 inhibition, angiotensin converting enzyme inhibitor (ACEi)/angiotensin receptor blocker (ARB), beta-blocker, and statin. Conclusion The EORP NSTEMI Registry is an international, prospective registry of care and outcomes of patients treated for NSTEMI, which will provide unique insights into the contemporary management of hospitalised NSTEMI patients, compliance with ESC 2015 NSTEMI Guidelines, and identify potential barriers to optimal management of this common clinical presentation associated with significant morbidity and mortality